Yi, G. & Grill, W. M. (2020). Data and code from: Waveforms optimized to produce closed-state Na+ inactivation eliminate onset response in nerve conduction block. Duke Research Data Repository. https://doi.org/10.7924/r4z31t79k
Flanagan, N., Wang, H., Winton, S., Richardson, C. (2020). Data from: Low-severity fire as a mechanism of organic matter protection in global peatlands: thermal alteration slows decomposition. Duke Research Data Repository. https://doi.org/10.7924/r4s46nm6p
Gunsch, C. (2020). Data from: Evaluation of the mycobiome of ballast water and implications for fungal pathogen distribution. Duke Research Data Repository. https://doi.org/10.7924/r4t72cv5v
Warnell, K., & Olander, L. (2020). Data from: Opportunity assessment for carbon and resilience benefits on natural and working lands in North. Carolina. Duke Research Data Repository. https://doi.org/10.7924/r4ww7cd91
Kundu, J., & Charbonneau, P. (2020). Data From: Postponing the dynamical transition density using competing interactions. Duke Research Data Repository. https://doi.org/10.7924/r4xd0wb95
OSNAP is an international program designed to provide a continuous record of the full-water column, trans-basin fluxes of heat, mass and freshwater in the subpolar North Atlantic. The OSNAP observing system consists of two legs: one extending from southern Labrador to the southwestern tip of Greenland across the mouth of the Labrador Sea (OSNAP West), and the second from the southeastern tip of Greenland to Scotland (OSNAP East).
The observing system also includes subsurface floats (OSNAP Floats) in order to trace the pathways of overflow waters in the basin and to assess the connectivity of currents crossing the OSNAP line.
OSNAP is a partner in the North Atlantic Virtual Institute (NAVIS), which connects science teams around the world studying climate variability and change in the North Atlantic. http://navinstitute.org/... [Read More]
The Integrated Precipitation and Hydrology EXperiment (IPHEX) seeks to characterize warm season orographic precipitation regimes, and the relationship between precipitation regimes and hydrologic processes in regions of complex terrain. IPHEX includes two major activities:
1. The development, evaluation and improvement of remote-sensing precipitation algorithms in support of the Global Precipitation Measurement Mission (GPM) through a NASA GPM ground validation field campaign: IPHEX-GVFC (https://iphex.pratt.duke.edu/node/64)
2. The evaluation of Quantitative Precipitation Estimation (QPE) products for hydrologic forecasting and water resource applications in the Upper Tennessee, Catawba-Santee, Yadkin-Pee Dee and Savannah river basins: IPHEX- HAP (H4SE) (https://iphex.pratt.duke.edu/node/65). NOAA HMT has synergy with this project.
How can an amorphous material be rigid? Glass – the prototypical and ubiquitous amorphous solid – inhabits an incredibly ramified and complex energy landscape, which presumably underlies its rigidity. But how? Dealing with so many relevant energy minima and the ensuing far-from-equilibrium dynamics has emerged as one of the central problems in statistical physics. Tackling it requires new tools and concepts. The Simons Collaboration on Cracking the Glass Problem, addressing such fundamental issues as disorder, nonlinear response and far-from-equilibrium dynamics, builds upon three powerful approaches: the study of marginal stability at jamming, the mean-field theory of glasses in infinite dimension, and the dynamics of systems in complex landscapes. The convergence of recent breakthroughs in these areas generates a unique opportunity to come to grips with these three outstanding and intimately related challenges. This collection of datasets is associated with publications from the Charbonneau group and their collaborators as part of the Simons collaboration.
Mitra, S., Zhong, J., MacAlpine, D., Hartemink, A., MacAlpine, H. (2020). Data from: RoboCOP: Multivariate state space model integrating epigenomic accessibility data to elucidate genome-wide chromatin occupancy. Duke Research Data Repository. https://doi.org/10.7924/r4hx1b43s
Cummer, S. A. (2020). Data from: Indirectly measured ambient electric fields for lightning initiation in fast breakdown regions. Duke Digital Repository. https://doi.org/10.7924/r4g44p43t
Ikegami, K., de March, C. A., Nagai, M. H., Ghosh, S., Do, M., Sharma, R., ... Matsunami, H. (2019). Data from: Structural instability and divergence from conserved residues underlie intracellular retention of mammalian odorant receptors. Duke Digital Repository. https://doi.org/10.7924/r40867k2k
Ridge, J. T., Gray, P. C., Windle, A. E., & Johnston, D. W. (2020), Deep learning for coastal resource conservation: automating detection of shellfish reefs. Remote Sens Ecol Conserv. doi:10.1002/rse2.134
Flenner, E., Berthier, L., Charbonneau, P., & Fullerton, C. (2019). Data from: Front-mediated melting of isotropic ultrastable glasses. Duke Digital Repository. https://doi.org/10.7924/r4542pd2c
Liao, M., & Barros, A. P. (2019). The Integrated Precipitation and Hydrology Experiment - Hydrologic Applications for the Southeast US (IPHEX-H4SE) Part IV: High-Resolution Enhanced Stage IV-Raingauge Combined Precipitation Product. Duke Digital Repository. https://idn.duke.edu/ark:/87924/r4pc2zd75
Mremi, A., Broadwater, G., Jackson, K. Amsi, P., Mbulwa, C., Hyslop, T., ... Hall, A. (2019). Data from: Breast cancer in Tanzanian, black American, and white American women: An assessment of prognostic and predictive features, including tumor infiltrating lymphocytes. Duke Digital Repository. https://doi.org/10.7924/r4bv7g09k
Altan, I., James, S., Khan, A., Quinn, M., Charbonneau, P., & McManus, J. (2019). Data and scripts from: Using Schematic Models to Understand the Microscopic Basis for Inverted Solubility in gammaD-crystallin. Duke Digital Repository. https://doi.org/10.7924/r4fq9v942
Huang, O., Long, W., Bottenus, N., Trahey, G., Farsiu, S. Palmeri, M. L. (2019). UltraDuke Version 1. Duke Digital Repository. https://doi.org/10.7924/r49z94h1s
Eghdami, M., & Barros, A. (2019). Namelists and scripts from: Vertical Dependence of Horizontal Scaling Behavior of Orographic Wind and Moisture Fields in Atmospheric Models. Duke Digital Repository. https://doi.org/10.7924/r4154jq8h
Op 't Eynde, J., Yu, A., Eckersley, C., & Bass, C. (2019). Data from: Primary blast wave protection in combat helmet design: a historical comparison between present data and World War I. Duke Digital Repository. https://doi.org/10.7924/r4r49m981
Keating, S., Rountree, W., Grebe, E., Pappas, A. L., Stone, M., Hampton, D.,...Busch, M. P. (2019). Data from: Development of an international external quality assurance program for HIV-1 incidence using the Limiting Antigen Avidity assay. Duke Digital Repository. https://doi.org/10.7924/r4ff3r13q
Khan, A., James, S., Quinn, M., Altan, I., Charbonneau, P., & McManus, J. (2019). Data and scripts from: temperature-dependent interactions explain normal and inverted solubility in a γD-crystallin mutant. Duke Digital Repository. https://doi.org/10.7924/r49w0dx6s
Wilson, J. W., Degan, S., Gainey, C. S., Mitropoulos, T., Simpson, M. J., Zhang, J. Y., & Warren, W. S. (2019). Data from: In vivo pump-probe and multiphoton fluorescence microscopy of melanoma and pigmented lesions in a mouse model. Duke Digital Repository. https://doi.org/10.7924/r4cc0zp95
Duke University Libraries' Multispectral Imaging Team. (2019). [Acts of the Apostles]. (multispectral file stack). Duke Digital Repository. https://doi.org/10.7924/r4c53jx21
Berthier, L., Charbonneau, P., Ninarello, A., Ozawa, M., & Yaida, S. (2019). Data and scripts from: Zero-temperature glass transition in two dimensions. Duke Digital Repository. https://doi.org/10.7924/r46w9b248
Berthier, L., Charbonneau, P., Kundu, J. (2019). Data and scripts from: Bypassing sluggishness: SWAP algorithm and glassiness in high dimensions. Duke Digital Repository. https://doi.org/10.7924/r49w0dr6j
Charbonneau, P., Hu, Y., Raju, A., Sethna, J., & Yaida, S. (2019). Data and scripts from: Morphology of renormalization-group flow for the de Almeida–Thouless–Gardner universality class. Duke Digital Repository. https://doi.org/10.7924/r4zc7wm7d
Charbonneau, P., Corwin, E. I., Fu, L., Tsekenis, G., & van der Naald, M. (2019). Data and scripts from: Glassy, Gardner-like phenomenology in minimally polydisperse crystalline systems. Duke Digital Repository. https://doi.org/10.7924/r4k93500n
Birolo, G., Charbonneau, P., & Hu, Y. (2019). Data and scripts from: Dynamics around the Site Percolation Threshold on High-Dimensional Hypercubic Lattices. Duke Digital Repository. https://doi.org/10.7924/r4571cf37
Altan, I., & Charbonneau, P. (2019). Data and scripts from: Obtaining soft matter models of proteins and their phase behavior. Duke Digital Repository. https://doi.org/10.7924/r4ww7bs1p
River, M. (2019). Data from: Suspended sediment mineralogy in stormflow of the Southern Piedmont. Duke Digital Repository. https://doi.org/10.7924/r4jq0xh5k
Melis, M., Poggi, D., Fasanella, G. O. D., Cordero, S., Katul, G. (2018). Data from: Resistance to flow on a sloping channel covered by dense vegetation following a dam-break. Duke Digital Repository. https://doi.org/10.7924/r4t72c41h
Lyu, F., Cummer, S., Qin, Z., Chen, M. (2018). Data from: Lightning initiation processes imaged with very high frequency broadband interferometry. Duke Digital Repository. https://doi.org/10.7924/r48c9vs2c
Pickart, R. (2018). Conductivity-Temperature-Depth (CTD) data as part of the OSNAP (Overturning in the Subpolar North Atlantic Program), from 2016 on the R/V Neil Armstrong. Duke Digital Repository. https://doi.org/10.7924/r4m61gc19
Pickart, R. (2018). Conductivity-Temperature-Depth (CTD) data as part of the OSNAP (Overturning in the Subpolar North Atlantic Program), from 2014 on the R/V Knorr (KN221-03). Duke Digital Repository. https://doi.org/10.7924/r4qz26535
Sweitzer, M. M., Watson, K. K., Erwin, S. R., Winecoff, A. A., Datta, N., Huettel, S., ... Zucker, N. L. (2018). Data from: Neurobiology of social reward valuation in adults with a history of anorexia nervosa. Duke Digital Repository. https://doi.org/10.7924/r45t3km1m
Palmeri, M. L., Qiang, B., Chen, S., Urban, M. W. (2018). QIBA Ultrasound Shear Wave Speed Digital Phantoms. Duke Digital Repository. https://doi.org/10.7924/r4sj1f98c
Zhuang, Y. and Charbonneau, P. (2018). Data and scripts from: Equilibrium phase behavior of the square-well linear microphase-forming model. Duke Digital Repository. V2 https://doi.org/10.7924/r42z16837
Charbonneau, P. and Yaida, S. (2018). Data and scripts from: Nontrivial critical fixed point for replica-symmetry-breaking transitions. Duke Digital Repository. V2 https://doi.org/10.7924/r4cf9ns11
Charbonneau, P., Corwin, E. I., Parisi, G., Poncet, A., Zamponi, F. (2018). Data and scripts from: Universal non-Debye scaling in the density of states of amorphous solids. Duke Digital Repository. V2 https://doi.org/10.7924/r4j67dg2z
Lozier, M.S., F. Li, S. Bacon, F. Bahr, A.S. Bower, S.A. Cunningham, M.F. de Jong, L. de Steur, B. deYoung, J. Fischer, S.F. Gary, B.J.W. Greenan, N.P. Holliday, A. Houk, L. Houpert, M.E. Inall, W.E. Johns, C. Johnson, J. Karstensen, G. Koman, I.A. Le Bras, X. Lin, N. Mackay, M. Oltmanns, R.S. Pickart, A.L. Ramsey, D. Rayner, F. Straneo, D.J. Torres, I. Yashayaev, J. Zhao (2019). Meridional overturning circulation and the associated heat and freshwater transports observed by the OSNAP (Overturning in the Subpolar North Atlantic Program) Array from 2014 to 2016. Duke Digital Repository. https://doi.org/10.7924/r4z60gf0f
Tao, J., & Barros, A. P. (2014). The Integrated Precipitation and Hydrology Experiment – Hydrologic Applications for the Southeast US (IPHEx-H4SE). Part II: Atmospheric Forcing and Topographic Corrections. Duke Digital Repository. http://hdl.handle.net/10161/8958
Tao, J., & Barros, A. P. (2014). The Integrated Precipitation and Hydrology Experiment. Part I: Quality High-Resolution Landscape Attributes Datasets. Duke Digital Repository. http://hdl.handle.net/10161/8968
Dulmage, Keely A., Darnell, Cynthia L., Vreugdenhil, A., Schmid, Amy K. (2018). Data and scripts from: Copy number variation is associated with gene expression change in archaea. Duke Digital Repository. https://doi.org/doi:10.7924/r4pz54w7h
Miguel, N., & Barros, A. P. (2014). The Integrated Precipitation and Hydrology Experiment - Hydrologic Applications for the Southeast US (IPHEx-H4SE). Part III: High-Resolution Ensemble Rainfall Products. Duke Digital Repository. http://hdl.handle.net/10161/8969
Charbonneau, P., Dyer, E., Lee, J., Yaida, S. (2016). Data and scripts from: Linking dynamical heterogeneity to static amorphous order. Duke Digital Repository. https://doi.org/doi:10.7924/G8VD6WC5
Berthier, L., Charbonneau, P., Jin, Y., Parisi, G., Seoane, B., Zamponi, F. (2016). Data and scripts from: Growing timescales and lengthscales characterizing vibrations of amorphous solids. Duke Digital Repository. https://doi.org/doi:10.7924/G8QN64NT
Yaida, S., Berthier, L., Charbonneau, P., Tarjus, G. (2016). Data and scripts from: Point-to-set lengths, local structure, and glassiness. Duke Digital Repository. https://doi.org/doi:10.7924/G8BG2KWP
Lam, C. T., Krieger, M. S., Gallagher, J. E., Asma, B., Schmitt, J. W, & Ramanujam, N. (2015). Data from: Design of a novel low cost point of care tampon (POCkeT) colposcope for use in resource limited settings. Duke Digital Repository. http://hdl.handle.net/10161/10056
Charbonneau, P., Altan, I., Fusco, D., Afonine, P.V. (2018). Data and scripts from: Learning about biomolecular solvation from water in protein crystals. Duke Digital Repository. https://doi:10.7924/r4bg2mc23
Berthier, L., Charbonneau, P., Coslovich, D., Ninarello, A., Ozawa, M., Yaida, S. (2017). Data and scripts from: Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling. Duke Digital Repository. https://doi.org/10.7924/G8ZG6Q9T
Hu, Y., Charbonneau, P. (2018). Data and Scripts from: Clustering and assembly dynamics of a one-dimensional microphase former. Duke Digital Repository. https://doi.org/10.7924/r41n81s8j
Eckersley, C., White, T., Cutcliffe, H., Shridharani, J., Wood, G., Bass, C. (2017). Foul tip impact attenuation of baseball catcher masks using head impact metrics. Duke Digital Repository. https://doi.org/10.7924/G81N7Z29.
Pickart, R. (2018). Microcat, Aquadopp, ADCP, and Tidbit data from the 2014-2016 Labrador Sea eastern boundary mooring array as part of OSNAP (Overturning in the Subpolar North Atlantic Program). Duke Digital Repository. https://doi.org/10.7924/r4fj2dr7k
Straneo, F.; Ramsey, A.; Bahr, F.; Torres, D. (2018). Microcat, current meter and ADCP data from the Cape Farewell mooring array southeast of Greenland as part of OSNAP (Overturning in the Subpolar North Atlantic Program). Duke Digital Repository. https://doi.org/10.7924/r4fb50z9b
Johns, W. and Houk, A. (2018). Microcat, current meter and ADCP data from the eastern mid-Atlantic ridge mooring array as part of OSNAP (Overturning in the Subpolar North Atlantic Program). Duke Digital Repository. https://doi.org/10.7924/r42n52w51
Zhuang, Y. and Charbonneau, P. (2017). Data and scripts from: Microphase equilibrium and assembly dynamics. Duke Digital Repository. https://doi.org/10.7924/G8JH3J7B
Charbonneau, P., Li, Y. (C.), Pfister, H. D., & Yaida, S. (2017). Cycle-expansion method for the Lyapunov exponent, susceptibility, and higher moments. Duke Digital Repository. https://doi.org/10.7924/G88050N6
Bass, C. R.; Yu, A. W., Capehart, B. P. (2017). 16s rRNA microarray analysis of murine blood and brain tissue. Duke Digital Repository. https://doi.org/10.7924/G8B56GNQ
Tao, J., & Barros, A. P. (2014). The Integrated Precipitation and Hydrology Experiment - Hydrologic Applications for the Southeast US (IPHEx-H4SE) Part IV: Soil Hydraulic Parameters. Duke Digital Repository. http://hdl.handle.net/10161/8959
Berthier, L.; Charbonneau, P.; Flenner, E.; Zamponi, F. (2017). Data and scripts from: The origin of ultrastability in vapor-deposited glasses. Duke Digital Repository. https://doi.org/10.7924/G8P26W5G
Asiedu, M. N.; Agudogo, J.; Krieger, M.; Miros, R.; Proeschold-Bell, R. J.; Schmitt, J. W.; Ramanujam, N. (2017). Design and preliminary analysis of a vaginal inserter for speculum-free cervical cancer screening. Duke Digital Repository. https://doi.org/10.7924/G8X34VDZ
Pham, A. T., Zhuang, Y., Detwiler, P., Socolar, J.E.S., Charbonneau, P., Yellen, B. (2017). Data and scripts from: Phase diagram and aggregation dynamics of a monolayer of paramagnetic colloids. Duke Digital Repository. https://doi.org/doi:10.7924/G86H4FBQ
Hu, Y., Fu, L., Charbonneau, P. (2018). Data, generating scripts and figures from: Correlation lengths in quasi-one-dimensional systems via transfer matrices. Duke Digital Repository. https://doi.org/10.7924/r4mk68m43
Fu, L., Bian, C., Shields, W., Cruz, D., Lopez, G., Charbonneau, P. (2017). Data and scripts from: Assembly of hard spheres in a cylinder: a computational and experimental study. Duke Digital Repository. https://doi.org/doi:10.7924/G82Z13F1
Fu, L., Steinhardt, W., Zhao, Y., Socolar, J.E.S., and Charbonneau, P. (2017). Data and scripts from: Hard sphere packings within cylinders. Duke Digital Repository. https://doi.org/10.7924/G8SF2T3Z
Lyu, F. (2018). Data from: Energetic radio emissions and possible terrestrial gamma-ray flashes associated with downward propagating negative leaders. Duke Digital Repository. https://doi.org/10.7924/r4j963v4s
Lyu, F., Cummer, S. A., Krehbiel, P. R., Rison, W., Briggs, M. S., Cramer, E., Roberts, O., Stanbro, M. (2018). Data from: Very high frequency radio emissions associated with the production of terrestrial gamma-ray flashes. Duke Digital Repository. https://doi.org/10.7924/r4r49kc2m
Zhao, J., Bower, A., Yang, J., Lin, X. (2018). CTD data collected by Slocum glider operated between June and November 2015 in the Iceland Basin as part of OSNAP (Overturning in the Subpolar North Atlantic Program). Duke Digital Repository. https://doi.org/10.7924/r4m905g03
Shaver, E. C., Burkepile, D. E., Silliman, B. R. (2017). Data from: Local management actions can increase coral resilience to thermally-induced bleaching. Duke Digital Repository. https://doi.org/10.7924/G8348HFP
Caves, E. M., Green, P. A., Zipple, M. N., Peters, S., Johnsen, S., Nowicki, S. (2018). Data and scripts from: Categorical perception of colour signals in a songbird. Duke Digital Repository. https://doi.org/10.7924/r4rx96r99
Aldrich, J.; Munger, M. C.; Cooper, A.; Rozell, M.; Wilcox, C.; Green, J. (2013). 2000-2004 Presidential Donor Survey. Duke Digital Repository. http://hdl.handle.net/10161/7882
Büthe, T., Bradford, A. (2018). Law and politics of antitrust in open economies - PTA Data: Antitrust/competition provisions in a sample of 182 preferential trade agreements, 1945-2010. Duke Digital Repository. https://doi.org/10.7924/r4h70c24h
Lingold, Mary Caton; Mueller, Darren; Trettien, Whitney. (2017). Provoke!: Digital Sound Studies. Duke Digital Repository. https://doi.org/10.7924/G8H12ZXR
Charbonneau, B., Charbonneau, P., Szamel, G. (2018). Data from: A microscopic model of the Stokes-Einstein Relation in arbitrary dimension. Duke Digital Repository. https://doi.org/10.7924/r4x061q6f
Foukal, N. (2018). Data from: Examining the origins of heat content variability in the eastern North Atlantic subpolar gyre. Duke Digital Repository. https://doi.org/10.7924/r4zw1d509
Frees, A. (2014). Image data from: Delivery-corrected imaging of fluorescently-labeled glucose reveals distinct metabolic phenotypes in murine breast cancers. Duke Digital Repository. http://hdl.handle.net/10161/9276
Agarwal, A.; Bañez, L. L.; Hall, R. P.; Cardones, A. R. (2018). Data from: Comparison of rituximab and conventional adjuvant therapy for pemphigus vulgaris: A retrospective analysis. Duke Digital Repository. https://dx.doi.org/10.7924/r4vh5gw86
