File Manifest for Data and scripts from: A semi-automated method for estimating Adelie penguin colony abundance from a fusion of multispectral and thermal imagery collected with Unoccupied Aircraft Systems

|   ArcGIS_folder.zip
|   Fig2.tiff
|   README.rtf
|   FileManifest.txt
|   
+---Datasheets
|   +---avian
|   |       ._avian_comparison_counts.csv
|   |       avian_comparison_counts.csv
|   |       Colony_Penguin_Density_avian.csv
|   |       Colony_Penguin_Density_avian.txt.xml
|   |       
|   \---torgersen
|           ._torg_comparison_counts.csv
|           Colony_Penguin_Density_torg.csv
|           Colony_Penguin_Density_torg.txt.xml
|           torg_comparison_counts.csv
|           
+---Orthomosaics
|   +---avian
|   |       2017_01_15_sequioaavian_transparent_reflectance_nir.tif
|   |       2017_01_15_sequioaavian_transparent_reflectance_nir.tif.aux.xml
|   |       2017_01_15_sequioaavian_transparent_reflectance_nir.tif.ovr
|   |       avianrgb_transparent_mosaic_group1.tif
|   |       avianrgb_transparent_mosaic_group1.tif.aux.xml
|   |       avianrgb_transparent_mosaic_group1.tif.ovr
|   |       avian_thermo_index_temperature [┬░c]_rectified.tfw
|   |       avian_thermo_index_temperature [┬░c]_rectified.tif
|   |       avian_thermo_index_temperature [┬░c]_rectified.tif.aux.xml
|   |       avian_thermo_index_temperature [┬░c]_rectified.tif.ovr
|   |       
|   \---torgersen
|           torgersen_rgb_transparent_mosaic_group1.tif
|           torgersen_rgb_transparent_mosaic_group1.tif.aux.xml
|           torgersen_rgb_transparent_mosaic_group1.tif.ovr
|           torgersen_thermal_index_temperature [┬░c].tfw
|           torgersen_thermal_index_temperature [┬░c].tif
|           torgersen_thermal_index_temperature [┬░c].tif.aux.xml
|           torgersen_thermal_index_temperature [┬░c].tif.ovr
|           torgersen_thermal_index_temperature [┬░c].tif.xml
|           torg_ndvi.tfw
|           torg_ndvi.tif
|           torg_ndvi.tif.aux.xml
|           torg_ndvi.tif.ovr
|           
\---ShapeFiles
    |   tree.txt
    |   
    +---Final
    |   +---avian
    |   |       .Rhistory
    |   |       colony_outlines_avian.CPG
    |   |       colony_outlines_avian.dbf
    |   |       colony_outlines_avian.prj
    |   |       colony_outlines_avian.sbn
    |   |       colony_outlines_avian.sbx
    |   |       colony_outlines_avian.shp
    |   |       colony_outlines_avian.shp.xml
    |   |       colony_outlines_avian.shx
    |   |       penguins_avian.CPG
    |   |       penguins_avian.dbf
    |   |       penguins_avian.prj
    |   |       penguins_avian.sbn
    |   |       penguins_avian.sbx
    |   |       penguins_avian.shp
    |   |       penguins_avian.shp.xml
    |   |       penguins_avian.shx
    |   |       potential_colonies_av.CPG
    |   |       potential_colonies_av.dbf
    |   |       potential_colonies_av.prj
    |   |       potential_colonies_av.sbn
    |   |       potential_colonies_av.sbx
    |   |       potential_colonies_av.shp
    |   |       potential_colonies_av.shp.xml
    |   |       potential_colonies_av.shx
    |   |       
    |   \---torgersen
    |           colony_outlines_torg.CPG
    |           colony_outlines_torg.dbf
    |           colony_outlines_torg.prj
    |           colony_outlines_torg.sbn
    |           colony_outlines_torg.sbx
    |           colony_outlines_torg.shp
    |           colony_outlines_torg.shp.xml
    |           colony_outlines_torg.shx
    |           penguins_torg.CPG
    |           penguins_torg.dbf
    |           penguins_torg.prj
    |           penguins_torg.sbn
    |           penguins_torg.sbx
    |           penguins_torg.shp
    |           penguins_torg.shp.xml
    |           penguins_torg.shx
    |           potential_colonies_torg.CPG
    |           potential_colonies_torg.dbf
    |           potential_colonies_torg.prj
    |           potential_colonies_torg.sbn
    |           potential_colonies_torg.sbx
    |           potential_colonies_torg.shp
    |           potential_colonies_torg.shp.xml
    |           potential_colonies_torg.shx
    |           
    +---Intermediate
    |   +---scratch_avian
    |   |       col_buff_mask.cpg
    |   |       col_buff_mask.dbf
    |   |       col_buff_mask.prj
    |   |       col_buff_mask.sbn
    |   |       col_buff_mask.sbx
    |   |       col_buff_mask.shp
    |   |       col_buff_mask.shp.xml
    |   |       col_buff_mask.shx
    |   |       col_buff_mask_temp.cpg
    |   |       col_buff_mask_temp.dbf
    |   |       col_buff_mask_temp.prj
    |   |       col_buff_mask_temp.sbn
    |   |       col_buff_mask_temp.sbx
    |   |       col_buff_mask_temp.shp
    |   |       col_buff_mask_temp.shp.xml
    |   |       col_buff_mask_temp.shx
    |   |       col_mask.cpg
    |   |       col_mask.dbf
    |   |       col_mask.prj
    |   |       col_mask.sbn
    |   |       col_mask.sbx
    |   |       col_mask.shp
    |   |       col_mask.shp.xml
    |   |       col_mask.shx
    |   |       col_mask_temp.cpg
    |   |       col_mask_temp.dbf
    |   |       col_mask_temp.prj
    |   |       col_mask_temp.sbn
    |   |       col_mask_temp.sbx
    |   |       col_mask_temp.shp
    |   |       col_mask_temp.shp.xml
    |   |       col_mask_temp.shx
    |   |       confilt.img
    |   |       confilt.img.aux.xml
    |   |       confilt.img.xml
    |   |       conmask.img
    |   |       conmask.img.aux.xml
    |   |       conmask.img.xml
    |   |       density.csv
    |   |       density.txt.xml
    |   |       frequency.cpg
    |   |       frequency.dbf
    |   |       frequency.dbf.xml
    |   |       frequency1.cpg
    |   |       frequency1.dbf
    |   |       frequency1.dbf.xml
    |   |       frequency2.cpg
    |   |       frequency2.dbf
    |   |       frequency2.dbf.xml
    |   |       frequency3.cpg
    |   |       frequency3.dbf
    |   |       frequency3.dbf.xml
    |   |       frequency4.cpg
    |   |       frequency4.dbf
    |   |       frequency4.dbf.xml
    |   |       frequency5.cpg
    |   |       frequency5.dbf
    |   |       frequency5.dbf.xml
    |   |       freq_1.cpg
    |   |       freq_1.dbf
    |   |       freq_1.dbf.xml
    |   |       freq_2.cpg
    |   |       freq_2.dbf
    |   |       freq_2.dbf.xml
    |   |       freq_3.cpg
    |   |       freq_3.dbf
    |   |       freq_3.dbf.xml
    |   |       freq_4.cpg
    |   |       freq_4.dbf
    |   |       freq_4.dbf.xml
    |   |       freq_5.cpg
    |   |       freq_5.dbf
    |   |       freq_5.dbf.xml
    |   |       guanocon1.img
    |   |       guanocon1.img.aux.xml