This folder contains the data and generating scripts for the figures in "Using schematic models to understand the microscopic basis for inverted solubility in gamma D-crystallin" by Altan et al., JPC B, 2019. (Matlab version 2018b was used for generating and running the Matlab scripts) Directory: ├── Fig.1====================================================== contains files for Fig.1 │   ├── 1h4a_perturbML ----------------------------- perturbed structures for 1h4a │   │   └── random │   │   ├── columnsStats.dat -- labels of columns in data files │   │   ├── 1h4a.pdb --- original .pdb file │   │   ├── 1h4a_rand*.pdb │   │   ├── randomStructure.m --- script that generates random structures │   │   └── stats.dat │   ├── 1hk0_perturbML ----------------------------- perturbed structures for WT │   │   └── random │   │   ├── columnsStats.dat -- labels of columns in data files │   │   ├── 1hk0.pdb --- original .pdb file │   │   ├── 1hk0_rand*.pdb │   │   ├── randomStructure.m --- script that generates random structures │   │   └── stats.dat │   ├── 2g98_perturbML ----------------------------- perturbed structures for 2g98 │   │   └── random │   │   ├── columnsStats.dat -- labels of columns in data files │   │   ├── 2g98.pdb --- original .pdb file │   │   ├── 2g98_rand*.pdb │   │   ├── randomStructure.m --- script that generates random structures │   │   └── stats.dat │   ├── 4jgf_perturbML ----------------------------- perturbed structures for P23T │   │   └── random │   │   ├── columnsStats.dat -- labels of columns in data files │   │   ├── 4jgf.pdb --- original .pdb file │   │   ├── 4jgf_rand*.pdb │   │   ├── randomStructure.m --- script that generates random structures │   │   └── stats.dat │   ├── 6eta_perturbML ----------------------------- perturbed structures for DBN │   │   └── random │   │   ├── columnsStats.dat -- labels of columns in data files │   │   ├── 6eta.pdb --- original .pdb file │   │   ├── 6eta_rand*.pdb │   │   ├── randomStructure.m --- script that generates random structures │   │   └── stats.dat │   ├── 6etc_perturbML ----------------------------- perturbed structures for DBI │   │   └── random │   │   ├── columnsStats.dat -- labels of columns in data files │   │   ├── 6etc.pdb --- original .pdb file │   │   ├── 6etc_rand*.pdb │   │   ├── randomStructure.m --- script that generates random structures │   │   └── stats.dat │   ├── README -- more detailed info about contents │   ├── fig1.eps -- final image generated by fig1.m │   └── fig1.m -- script that generates the figure ├── Fig.10 ====================================================== contains files for Fig.10 │   ├── README -- more detailed info about contents │   ├── dataColumns.dat -- labels of columns in data files │   ├── eps15.8_ta1.9_tau0.05_highT.dat -- binodal data at higher T for eps=15.8 │   ├── eps15.8_ta1.9_tau0.05_lowT.dat -- binodal data at lower T for eps=15.8 │   ├── eps40_ta1.9_tau0.05_highT1.dat -- binodal data at higher T for eps=40 │   ├── eps40_ta1.9_tau0.05_lowT.dat -- binodal data at lower T for eps=40 │   ├── fig10.eps -- final image generated by fig10.m │   └── fig10.m -- script that generates the figure ├── Fig.4a ====================================================== contains files for Fig.4a │   ├── DBI_isobar_P0.0001.dat -- equation of state and /N data from simulations │   ├── README -- more detailed info about contents │   ├── ars.dat -- crystal free energies from Einstein crystal simulations │   ├── c4frac.dat -- fraction of bonds active through Patch 4 from NPT simulations │   ├── dataColumns.dat -- labels of columns in data files │   ├── fig4a.eps -- final image generated by fig4a.m │   ├── fig4a.m -- script that generates the figure │   └── mus.dat -- chemical potentials at various beta from Einstein crystal simulations and TI ├── Fig.4b ====================================================== contains files for Fig.4b │   ├── DBI_isobar_P0.0001.dat -- equation of state and /N data from simulations │   ├── README -- more detailed info about contents │   ├── ars.dat -- crystal free energies from Einstein crystal simulations │   ├── c4frac.dat -- fractions of bonds active through Patch 4 from NPT simulations │   ├── dataColumns.dat -- labels of columns in data files │   ├── fig4b.eps -- final image generated by fig4b.m │   ├── fig4b.m -- script that generates the figure │   └── mus.dat -- chemical potentials at various beta from Einstein crystal simulations and TI ├── Fig.5 ====================================================== contains files for Fig.5 │   ├── README -- more detailed info about contents │   ├── data30.txt -- xi(beta) for nw=30 │   ├── data71.txt -- xi(beta) for nw=71 │   ├── data80.txt -- xi(beta) for nw=80 │   ├── dataColumns.dat -- labels of columns in data files │   ├── dataRes.txt -- Gamma(beta) │   ├── fig5.eps -- final image generated by fig5.m │   └── fig5.m -- script that generates the figure ├── Fig.6 ====================================================== contains files for Fig.6 │   ├── README -- more detailed info about contents │   ├── dataColumns.dat -- labels of columns in data files │   ├── fig6.eps -- final image produced by fig6.m │   ├── fig6.m -- script that generates the figure │   ├── solubilityDBI_nw10_f0.5.dat --- solubility data for DBI, nw=10, f=0.5 │   ├── solubilityDBI_nw30_f0.5.dat --- solubility data for DBI, nw=30, f=0.5 │   ├── solubilityDBI_nw35_f0.5.dat --- solubility data for DBI, nw=35, f=0.5 │   ├── solubilityDBI_nw50_f0.5.dat --- solubility data for DBI, nw=50, f=0.5 │   ├── solubilityDBI_nw70_f0.5.dat --- solubility data for DBI, nw=70, f=0.5 │   ├── solubilityDBN_nw10_f0.5.dat --- solubility data for DBN, nw=10, f=0.5 │   ├── solubilityDBN_nw30_f0.5.dat --- solubility data for DBN, nw=30, f=0.5 │   ├── solubilityDBN_nw35_f0.5.dat --- solubility data for DBN, nw=35, f=0.5 │   ├── solubilityDBN_nw50_f0.5.dat --- solubility data for DBN, nw=50, f=0.5 │   └── solubilityDBN_nw70_f0.5.dat --- solubility data for DBN, nw=70, f=0.5 ├── Fig.7 ====================================================== contains files for Fig.7 │   ├── README -- more detailed info about contents │   ├── dataColumns.dat -- labels of columns in data files │   ├── fig7.eps -- final image produced by fig7.m │   ├── fig7.m -- script that generates the figure │   ├── solubilityDBI_sw-10.dat --- solubility data for DBI, sw=-10 │   ├── solubilityDBI_sw-15.dat --- solubility data for DBI, sw=-15 │   ├── solubilityDBI_sw-30.dat --- solubility data for DBI, sw=-30 │   ├── solubilityDBI_sw-50.dat --- solubility data for DBI, sw=-50 │   ├── solubilityDBI_sw0.dat --- solubility data for DBI, sw=0 │   ├── solubilityDBN_sw-10.dat --- solubility data for DBN, sw=-10 │   ├── solubilityDBN_sw-15.dat --- solubility data for DBN, sw=-15 │   ├── solubilityDBN_sw-30.dat --- solubility data for DBN, sw=-30 │   ├── solubilityDBN_sw-50.dat --- solubility data for DBN, sw=-50 │   └── solubilityDBN_sw0.dat --- solubility data for DBN, sw=0 ├── Fig.8a ====================================================== contains files for Fig.8a │   ├── README -- more detailed info about contents │   ├── dataColumns.dat -- labels of columns in data files │   ├── error_0.05 ---------------------------------------------- contains files for Fig.8a │   │   ├── averageSol_simple.m │   │   ├── params_APFnsPOk.dat --- perturbed parameters │   │   ├── solubilityDBI_*.dat --- DBI solubility line from the perturbed parameters │   │   │── solubilityDBN_*.dat --- DBN solubility line from the perturbed parameters │   ├── error_0.10 │   │   ├── averageSol_simple.m --- script that analyzes solubility lines from perturbed params │   │   ├── params_*.dat --- perturbed parameters │   │   ├── solubilityDBI_*.dat --- DBI solubility line from the perturbed parameters │   │   ├── solubilityDBN_*.dat --- DBN solubility line from the perturbed parameters │   ├── fig8a.eps -- final image produced by fig8a.m │   └── fig8a.m -- script that generates the figure ├── Fig.8b ====================================================== contains files for Fig.8b │   ├── README -- more detailed info about contents │   ├── dataColumns.dat -- labels of columns in data files │   ├── fig8b.eps -- final image produced by fig8b.m │   ├── fig8b.m -- script that generates the figure │   ├── params__c4_f0.9.dat --- parameters for f=0.9 │   ├── params_c4_f1.5.dat --- parameters for f=1.5 │   ├── params_c4_f1.dat --- parameters for f=1 │   ├── solubilityDBI_c4_f0.9.dat --- DBI solubility data for f=0.9 │   ├── solubilityDBI_c4_f1.5.dat --- DBI solubility data for f=1.5 │   ├── solubilityDBI_c4_f1.dat --- DBI solubility data for f=1 │   ├── solubilityDBN_c4_f0.9.dat --- DBN solubility data for f=0.9 │   ├── solubilityDBN_c4_f1.5.dat --- DBN solubility data for f=1.5 │   └── solubilityDBN_c4_f1.dat --- DBN solubility data for f=1 ├── Fig.8c ====================================================== contains files for Fig.8c │   ├── README -- more detailed info about contents │   ├── dataColumns.dat -- labels of columns in data files │   ├── fig8c.eps -- final image produced by fig8c.m │   ├── fig8c.m -- script that generates the figure │   ├── params_f1_0.1_f2_1.3224.dat --- parameters for f1=0.1, f2=1.3224 │   ├── params_f1_0.4_f2_1.2150.dat --- parameters for f1=0.4, f2=1.2150 │   ├── params_f1_1.5_f2_0.8209.dat --- parameters for f1=1.5, f2=0.8209 │   ├── solubilityDBI_c4_f1.dat --- DBI solubility data for f1=1, f2=1 │   ├── solubilityDBI_f1_0.1_f2_1.3224.dat --- DBI solubility data for f1=0.1, f2=1.3224 │   ├── solubilityDBI_f1_0.4_f2_1.2150.dat --- DBI solubility data for f1=0.4, f2=1.2150 │   ├── solubilityDBI_f1_1.5_f2_0.8209.dat --- DBI solubility data for f1=1.5, f2=0.8209 │   ├── solubilityDBN_c4_f1.dat --- DBN solubility data for f1=1, f2=1 │   ├── solubilityDBN_f1_0.1_f2_1.3224.dat --- DBN solubility data for f1=0.1, f2=1.3224 │   ├── solubilityDBN_f1_0.4_f2_1.2150.dat --- DBN solubility data for f1=0.4, f2=1.2150 │   └── solubilityDBN_f1_1.5_f2_0.8209.dat --- DBN solubility data for f1=1.5, f2=0.8209 ├── Fig.9a ====================================================== contains files for Fig.9a │   ├── README -- more detailed info about contents │   ├── dataColumns.dat -- labels of columns in data files │   ├── fig9a.eps -- final image produced by fig9a.m │   ├── fig9a.m -- script that generates the figure │   ├── params_tau0.01.dat --- parameters for tau=0.01 │   ├── params_tau0.25.dat --- parameters for tau=0.25 │   ├── params_tau0.35.dat --- parameters for tau=0.35 │   ├── solubilityDBI_c4_f1.dat --- DBI solubility data for tau=0.05 │   ├── solubilityDBI_tau0.01.dat --- DBI solubility data for tau=0.01 │   ├── solubilityDBI_tau0.25.dat --- DBI solubility data for tau=0.25 │   ├── solubilityDBI_tau0.35.dat --- DBI solubility data for tau=0.35 │   ├── solubilityDBN_c4_f1.dat --- DBN solubility data for tau=0.05 │   ├── solubilityDBN_tau0.01.dat --- DBN solubility data for tau=0.01 │   ├── solubilityDBN_tau0.25.dat --- DBN solubility data for tau=0.25 │   └── solubilityDBN_tau0.35.dat --- DBN solubility data for tau=0.35 ├── Fig.9b ====================================================== contains files for Fig.9b │   ├── README -- more detailed info about contents │   ├── dataColumns.dat -- labels of columns in data files │   ├── fig9b.eps -- final image produced by fig9b.m │   ├── fig9b.m -- script that generates the figure │   ├── params_tau0.28_f1.1.dat --- parameters for f=1.1, tau=0.28 │   ├── solubilityDBI_tau0.28_f1.1.dat --- DBI solubility data for f=1.1, tau=0.28 │   └── solubilityDBN_tau0.28_f1.1.dat --- DBI solubility data for f=1.1, tau=0.28 └── README